The cells were subsequently rinsed with PBS and observed under a fluorescent microscope (ZEISS). To do the TUNEL assay , monolayer cells in PLX3397 ic50 96-well P005091 plate were treated with corresponding reagents and cultured

at 37°C. Cells were subsequently fixed in 3.7% paraformaldehyde for 7 minutes, and quantitation of apoptotic cells was measured by in situ colorimetric TUNEL assay (HT TiterTACSTMAssay kit, TREVIGEN®) following the manufacturer’s protocol. The results were immediately analyzed at 450 nm in the microplate reader. Autophagy assay Autophagy was detected by transmission electron microscopy, GFP-LC3 and MDC assays. For transmission electron microscopy assay, cells were trypsinized, fixed for 24 hours with 2.5% glutaraldehyde in 0.1 M sodium cacodylate, and then fixed for another 30 minutes with 1.0% osmium tetroxide. Cells were trapped in agarose, treated with 0.5% uranyl acetate for 1 hour in the dark and dehydrated in a graded series of ethanol.

They were transitioned to propylene oxide, infiltrated in Epon®/Araldite® resin for 24 hours, embedded in molds and polymerized for 48 hours at 70°C. Blocks were cut to determine area into 70 nm sections. The thin sections were collected on mesh nickel grids and stained with aqueous uranyl acetate and lead citrate. Grids were examined and check details photographed with a H-800 transmission electron microscope (Hitachi, Tokyo, Japan). For GFP-LC3 assay, cells were cultured in 6-well plates and transfected with GFP-LC3 (Addgene plasmid 24920) with Lipofectamine™ 2000 (Invitrogen, USA) following the manufacturer’s protocol. At 24 hours

after transfection, the cells were treated with paclitaxel (100 nM) or DMSO control and cultured at 37°C for 24 hours. The cells were subsequently examined under the fluorescence microscope (ZEISS), with 395 nm excitation wavelength and 509 nm emission filter respectively. For MDC assay, cells cultured in 6-well plate were treated with 0.05 mM MDC and incubated at 37°Cfor 20 minutes. After staining, cells were fixed in 4% paraformaldehyde for 10 minutes L-NAME HCl and intracellular autophagy was detected using a fluorescence microscope (ZEISS) with 380 nm excitation wavelength and 525 nm emission filter. MDC and GFP-LC3 assay results were ranked by the intracellular punctuates per cell: 1—0 to 4 punctuates, 2—5 to 9, 3—10 to 14, 4—15 to 19 and 5—more than 19. Cell scores were non-normally distributed and shown as mean of at least 20 per group, and confirmed by at least three separate experiments [18]. Beclin 1 siRNA transfection Cells were seeded in 6-well plates and incubated for 24 hours, then transfected with beclin 1-targeted siRNA or control random siRNA(Invitrogen) using Lipofectamine™ 2000 according to the manufacturer’s protocol.